rs38585067 SNP Detail

Summary

• ID
  rs38585067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68941356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAAGGAA AGAACCAGAG
  ACTCCTACAA GTCAGAGTGT ACAAGCTTCA CATGCACACA GTCACACCGA GACACACTTC
  ATAAAGAAGT ATAAAAACAA TGATGATAGA CGCTCCCAAA CCTGCTTAAG CAGAAAAGGT
  TGCTGGAGTA AAAAGGGGTA GAAAGGATGA GAGTCGCCAC ACTGCCGAAA ACACGGAAGA
  R
  ACATGAGCAA AGCTTCTGAA AGCAAAATGC CATCGTCAGT GGCTCAGAGC TCATCACCCA
  ACTATGTCAA GGTACTAGGA AGCTAAGTGC AGCCTCTCTT TCCAGACTGC ACTGAGCCAT
  CACTGTCCCT TCTCTCGGGA TGGCATCGCG ATGGCCATTC AGCCAATGGC TTCACACAGC
  AGACAGAGCC ACCCAGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50730520	NES14249508	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38585067					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50730520	NES14249508	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68941356 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682107	regulatory region 682107	50 bp proximal
Tssr90367	transcription start site region 90367	213 bp downstream
Tssr90368	transcription start site region 90368	266 bp downstream
Tssr90369	transcription start site region 90369	380 bp downstream