rs38585967 SNP Detail

Summary

• ID
  rs38585967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131017598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAAATA AAAACAAGAT
  GAAAAGAAGC CTTTTACGTT TTTTTCTTTT TTCTTTTCTT TCTTTTTTTT TTCCTTTTTT
  CTTTTGTCCT GAGAGATCTT GTCCAGTAAA TGGCTTCTCT GTGACACACA GTGGCCTCTG
  CCCTGTGAAG TGTCTGATGA AGCTAAAGAG ATAGCCAAAC CCACTCCTGT TGGTGGTCAC
  R
  TTTGGCAGCC CGTCTCACTT AGTTTCTGAT TTTTTTTTAA ATAACAACAG ATCTTAACAT
  CTCCTTTGAG CGAACCCGTT TGCAGTTCAT TTTTTTAATC TCTTTCTTTT CACTCCTGTA
  AAAAGCCCAG CACTTGAATT GTTCTTTCTT TAAATGTTCT GTGTTTGTAT CTGTTTTTAT
  TAGCCGATTA GTGGGAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51634187	NES14648843	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38585967					SNP	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634187	NES14648843	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131017598 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Tssr31723	transcription start site region 31723	1156 bp downstream
Tssr31724	transcription start site region 31724	112 bp downstream
Tssr31725	transcription start site region 31725	within coordinates