rs38587192 SNP Detail

Summary

• ID
  rs38587192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75785616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAGGCAT CTCCCCTCAC
  CTCAGGCCTC CAGTGAAGCT GAGCTAGCTA CTGACCTGAT TGACATGGGT CCTGACCCCG
  CAGCCACAAA CAACCTCTCA TCTCAACTGG CAGGAATGAG TAAGTATGCT GGGGACTCCA
  GCCAAGGGTA TGTTTCAATG TGTGGGTAGC TTCAAAGTTC CTGTGCTCGC CAACAGCAGA
  R
  CATTGGTCCA CATCTTACTT TGCTGGGATC CCAAGCCAAA TCTTGCTACA GGATTGGGCA
  AAACTTGTGA GAATGCCCTG GGAGTACCAA TGTCCCTGAG CCCCTTGGAT AATATAAATC
  CCACTGCACT CTAACCATCC CTCTGCCCTG CCTCCCCATC CCCTCCATCC ACCCCACCTG
  AACATCCTGG GGACCATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50571461	NES14071447	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38587192					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50571461	NES14071447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75785616 () rs orientation: forward

Symbol	Name	Function Class
Tom1	target of myb1 trafficking protein	within coordinates
Tssr78039	transcription start site region 78039	704 bp downstream
Tssr78040	transcription start site region 78040	668 bp downstream
Tssr78041	transcription start site region 78041	631 bp downstream
Tssr78042	transcription start site region 78042	1334 bp upstream