rs38588237 SNP Detail

Summary

• ID
  rs38588237
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:75235785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA CAGATGACCT TCACGGTGCT
  M
  GATACTTGAA GGCAACAGTG TGTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50415665	NES13934677	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	C	C		A	C		C
ss322267506	CHEV_7_82730923	CHEVERUD	SCREENING_POP	f	SNP											A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38588237					SNP	A	A	A	A	A	A	C	A	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50415665	NES13934677	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75235785 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	within coordinates
Rr400375	regulatory region 400375	1940 bp upstream
Rr649259	regulatory region 649259	322 bp distal
Rr649260	regulatory region 649260	1088 bp proximal
Tssr67241	transcription start site region 67241	323 bp downstream
Tssr67242	transcription start site region 67242	142 bp upstream
Tssr67243	transcription start site region 67243	166 bp upstream
Tssr67244	transcription start site region 67244	187 bp upstream
Tssr67245	transcription start site region 67245	224 bp upstream
Tssr67246	transcription start site region 67246	242 bp upstream
Tssr67247	transcription start site region 67247	270 bp upstream
Tssr67248	transcription start site region 67248	326 bp upstream
Tssr67249	transcription start site region 67249	349 bp upstream
Tssr67250	transcription start site region 67250	382 bp upstream
Tssr73048	transcription start site region 73048	1851 bp downstream