rs38588776 SNP Detail

Summary

• ID
  rs38588776
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11796880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG CTGCTTAGCA ATTTTCTGCT
  W
  AGCCTGTACG AGAAAAGAAG CAACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NZW/LacJ	WSB/EiJ
ss50616008	NES13627373	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	A
ss146053638	ENSMUSSNP3109899	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NZW/LacJ	WSB/EiJ
rs38588776					SNP	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50616008	NES13627373	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11796880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10634	CpG island 10634			120 bp distal
Cpgi10635	CpG island 10635			203 bp proximal
Gm41810	predicted gene, 41810			within coordinates
Gm59062	predicted gene, 59062			within coordinates
Rr544382	regulatory region 544382			1282 bp distal
Rr544383	regulatory region 544383			806 bp distal
Rr544384	regulatory region 544384			84 bp distal
Rr544385	regulatory region 544385			521 bp proximal
Rr544386	regulatory region 544386			917 bp proximal
Rr544387	regulatory region 544387			939 bp proximal
Stx3	syntaxin 3			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr155283	transcription start site region 155283			1412 bp downstream
Tssr155284	transcription start site region 155284			1401 bp downstream
Tssr155285	transcription start site region 155285			940 bp downstream
Tssr155286	transcription start site region 155286			474 bp downstream
Tssr155287	transcription start site region 155287			1965 bp upstream
Tssr158398	transcription start site region 158398			1074 bp upstream
Tssr158399	transcription start site region 158399			633 bp upstream
Tssr158400	transcription start site region 158400			551 bp upstream