rs38591508 SNP Detail

Summary

• ID
  rs38591508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15782559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGAAGA AGGCTGGGAA
  AAGAAGTCAG AGGGTACTCG GGAATAAAAG CTGAACACCC AAACTAGACC CCTACCCTGC
  CCTTCTGCAG CAGGCAGACA CAGAATGGCA GTGAAGAGGG GAAAGTCAGC CTTCTTGCCA
  AGATCTCCCC TTCATTGCTC TAAGGCTGGT TCAGAGCTTT GCAGTCACAG GTTTCTATTC
  R
  TTCTTAAAGC GTTGATCATC CTCGACAACC CTGACAAAGC CTGCCAAGTC ACATCCTCCT
  GAGCTCAAGG CTCCCATCTG GCCTCGAGGA GAGAGAAAGG CTTTCTCATC TTCCTCCTCC
  TCCTTAGGAC TTCTCCATCC TCCTCTCGTG CATCTGTGCT CGATCCTAAA ACATTCTCCT
  TCTGTTCACA CTCCCACTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50640772	NES13617899	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38591508					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640772	NES13617899	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15782559 () rs orientation: forward

Symbol	Name	Function Class
Gm50348	predicted gene, 50348	within coordinates
Rr406864	regulatory region 406864	527 bp distal
Rr544634	regulatory region 544634	1311 bp distal