rs38595606 SNP Detail

Summary

• ID
  rs38595606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134805104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGGAG AGGAGAGGCG
  ATAATTTACA GAAGTCAGTT CTGTCCTTCC ATCATGTGGT TCCCAGGGAT CAAGCTCAGA
  CCACCAGGCC TGGCAACAAA TGCCTTTACC TACTGAGCCC TACCTCTCTG GTCCCTACTC
  AGGCTTTTGT TTCCTTAACC ATTGGAAAGG ACACTAGGTG TCCCTTTCGT CACTGGGAAC
  R
  CCAGCTGGGA TGATCACAGT AGGGCCAGCC TGCCAGACCT GTTTGTAATC TTAGGGTCTG
  AGTATGAGGT ACCACCACGG GGAAAAGTGA TTGGGCTCTA GTTCTCCTGA CTTCAGACAC
  CTCCAATACA GAACACTCAA CCTTCCCACT TTAACCTTAG TTGAGAGTTG CCAGGTGAGA
  GGCCACCCAC TTATTACTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51438877	NES14009642	PERLEGEN	MM_PANEL2	f	SNP	A			G	G	G	G	G	G	G	G	G	G
ss133787568	ENSMUSSNP6205157	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38595606					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51438877	NES14009642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134805104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	1788 bp proximal
Gm67917	predicted gene, 67917	800 bp downstream
Rr368197	regulatory region 368197	1744 bp upstream
Rr639725	regulatory region 639725	1713 bp distal
Rr639726	regulatory region 639726	274 bp proximal
Rr639727	regulatory region 639727	364 bp proximal
Rr639728	regulatory region 639728	905 bp proximal
Rr639729	regulatory region 639729	1944 bp proximal