rs38602657 SNP Detail

Summary

• ID
  rs38602657
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5900594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTACAGTCC TGGACTGGGT GGAGTGCCAG AGACTTCTGA
  AGGGCTTCCC AGTCAGGGAC AAGGACGGGT AGTGAGAATC TGCCCTGAGA TTTACTCTTC
  Y
  CTCGGGTCCA GGCTGCTCTG GTTTGCAAGG CTCCATCCAG GTCAAACTCA GGCTTTCCTC
  ATGGCCTCTC GGTTCCAGTT ACCTTAAAGC TATCACCCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50577056	NES13648097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38602657					SNP	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577056	NES13648097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5900594 () rs orientation: forward

Symbol	Name	Function Class
Frmd8	FERM domain containing 8	408 bp downstream
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59610	predicted gene, 59610	1323 bp upstream
Rr370436	regulatory region 370436	within coordinates
Tssr154521	transcription start site region 154521	1898 bp downstream
Tssr157784	transcription start site region 157784	605 bp upstream
Tssr157785	transcription start site region 157785	552 bp upstream