rs38608353 SNP Detail

Summary

• ID
  rs38608353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10583405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGAGCAA AAACTTGGGC
  TCCGGGAATG GAAGGCGCTG GCAGTCGCGG AACGTCCCCC TTAGCTCGCG ATCTCAAAGG
  AGCTGTTCCC ACCACGCGCC TTTTGGGCAG CGGAAGCAGC TATTCTGGGT CCTTTTTTGC
  TCATAGGAGG TCACTTGTTA TTGAGGATTG GTCCAGGCCT GATGGGACGG AGAGCGAAGT
  R
  TGAGTTGTGT GCGTGGTTGA TTGAGTCTTC AAACTTGCCC CATGTGGTCA GGGGAAAGGG
  GAGATGATAA TGGGGCAAGT TTTGAGTTCA TAATTTTCCG GTGGATGTCC AGGAGGTTGA
  GGAATTTGAG CAATGTCTGC ACCCCCCCCC CCCCGGCCCT CTCCAGACCC ACCCTTTTGC
  CTGGGGCTGT TGTTTACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50601258	NES13643020	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38608353					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601258	NES13643020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10583405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10615	CpG island 10615	within coordinates
Ddb1	damage specific DNA binding protein 1	within coordinates
Gm59162	predicted gene, 59162	460 bp downstream
Rr405857	regulatory region 405857	385 bp downstream
Tkfc	triokinase, FMN cyclase	387 bp upstream
Tssr155068	transcription start site region 155068	487 bp downstream
Tssr155069	transcription start site region 155069	427 bp downstream
Tssr155070	transcription start site region 155070	397 bp downstream
Tssr155071	transcription start site region 155071	346 bp downstream
Tssr155072	transcription start site region 155072	93 bp downstream
Tssr155073	transcription start site region 155073	232 bp upstream
Tssr155074	transcription start site region 155074	1751 bp upstream
Tssr158200	transcription start site region 158200	1726 bp upstream
Tssr158201	transcription start site region 158201	1704 bp upstream
Tssr158202	transcription start site region 158202	1674 bp upstream
Tssr158203	transcription start site region 158203	1644 bp upstream
Tssr158204	transcription start site region 158204	636 bp upstream
Tssr158205	transcription start site region 158205	575 bp upstream
Tssr158206	transcription start site region 158206	571 bp upstream
Tssr158207	transcription start site region 158207	126 bp upstream