rs38609296 SNP Detail

Summary

• ID
  rs38609296
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38222259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCAAGCAG TGACGGAAAA CTTCCCGTTC AAAAGAAAAG
  AGAATTTACA CATAGCCATT TTGAAACAAC AAAGAGTTTT GCGTACCTTA TAGTCAGGAA
  K
  ATTTTATTCA TCAATTGTGA GCGGTTGTGA TAAGTATATA TATTGACCAC TCTGTGTGTC
  AGATCGAGTG GTAGGGAAAT ATTGGTGACT ACCGTTTTGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51098379	NES14356877	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38609296					SNP	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098379	NES14356877	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38222259 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	1214 bp upstream
Cpgi5461	CpG island 5461	653 bp distal
Riok1	RIO kinase 1	within coordinates
Rr281252	regulatory region 281252	within coordinates
Rr369679	regulatory region 369679	828 bp downstream
Tssr119342	transcription start site region 119342	973 bp downstream
Tssr122123	transcription start site region 122123	1370 bp upstream
Tssr122124	transcription start site region 122124	1336 bp upstream
Tssr122125	transcription start site region 122125	1125 bp upstream
Tssr122126	transcription start site region 122126	1099 bp upstream
Tssr122127	transcription start site region 122127	351 bp upstream
Tssr122128	transcription start site region 122128	331 bp upstream
Tssr122129	transcription start site region 122129	299 bp upstream