rs38609521 SNP Detail

Summary

• ID
  rs38609521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24148477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTTTCA GAATCAGGGT
  AGCATACATT CTAATGCTAC ACACACACAC ACACAGACAC ACACACATAG AGACACATAC
  AACGAATATC TTGCATATCT GGGTGTCTCA ACTCCACCCA GCCACTTAGT TCCTGTTCAC
  TCGGGCTCTG CAGGGAATCA TTCAGGGCTT CCCTGCACTT GAGTACAAGA GAAACCCAAC
  R
  TCTGGTCAGA AGCATCTGAT TGCATATCTC CCTCTTCATG CTTTCCGGAA ATAAAGACCC
  CCATTTCTAG AGCAGGCTAG AATCTCACAG ATCAAAATGT GGGTGAAACC TCTAAGGTTT
  TATTTAGCTC TGTGTGCGTG CCATTTGGAT AGGTTACAGT CTTATACTTC TGAGACTGTA
  GTTTCTGTCC AGCCCCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50928999	NES13477449	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38609521					SNP	A	A	G	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50928999	NES13477449	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24148477 () rs orientation: forward

Symbol	Name	Function Class
Gm69483	predicted gene, 69483	within coordinates
Rr371000	regulatory region 371000	752 bp downstream
Rr408576	regulatory region 408576	1319 bp distal
Rr408577	regulatory region 408577	330 bp distal