rs38611802 SNP Detail

Summary

• ID
  rs38611802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:72835477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGATTTT TATAAGGAAA
  GGGGTAAAGG GTTTTCCTTT ATGCTTTAAA AAAAACCGGT GTCTTTTCAT TTGCTTGGCC
  TGTATCCTTG CTCTGGGTTA GGGACCTTCC GTTCAGAGCC TTACTGGAAC CAAACAAGCA
  ACTAGGTGAC CTTCTGGACA CCAGCTCTGA TGTCAGTTAT GTGTAAAGCC AGGCAGATGG
  R
  TCCAGATAGT CCTGGAGATT TCCACCTACT GAAATGTTTC CATACTTAAT TTCTACTCAG
  AGAACCTGAA GTCACTTCTA ACAGTATCTC TCAAGACCGA TACAGTTGAG CTCCATCTGC
  CCTTCTAACA TCGGCGGCCT GGCAACAGTG TCTTGCTAAG CTGGGAAACA TGGTATGGTG
  AGAAGGTCTC TAACTTCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51500069	NES13955904	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38611802					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51500069	NES13955904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:72835477 () rs orientation: forward

Symbol	Name	Function Class
Gm20083	predicted gene, 20083	within coordinates
Gm28746	predicted gene 28746	336 bp upstream
Tssr67187	transcription start site region 67187	37 bp upstream
Tssr67188	transcription start site region 67188	69 bp upstream