rs38611859 SNP Detail

Summary

• ID
  rs38611859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:112856464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGGCAC GTGCCCAAAG
  CCGGAAGAGG CAAGGAAGGA TTTTCTCCCA GAGCTGTCAG CAAGGACATC TGCAGGTGCC
  TGCTTCCAGA CTTCCAGTCT GCAAAAAAGA GAGGCAAGGC ATTTCTGCTG GTCTTAAGCC
  AAGCAGTTGG GATGCCACAC TGCAGCAGGA GCCTTCTGCA GCAGCTCACC TGCTCTCATT
  R
  GATTTTAACC ATCCCCCATG AGCCGTGTGT TTATGGTTTG ATCCCCAGGG TGACACTACC
  AGGAAGTGGT GGGACCTTCA GGAGGTCCTC AAGTCATTTC AGACACATAG GAACAGGACT
  ATGGGACTGT AGAACCTTTG CTTCCTGGGT GTGGGGGTGA CTGGTCTCTA CTGAGAGCTC
  CTGTCATGAT GTGCCTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51845257	NES14771322	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38611859					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51845257	NES14771322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112856464 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636401	regulatory region 636401			within coordinates
Rr636402	regulatory region 636402			428 bp proximal
Srgap3	SLIT-ROBO Rho GTPase activating protein 3			Intron
				Noncoding-Transcript-Variant