rs38613667 SNP Detail

Summary

• ID
  rs38613667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15780177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTTGTGA CTCTCAATCA GGGTGACTGG CATGACATCC
  AAGAGTCTTT GTTATCATAT TGGAACATTT TGGATTGACA CAACTTGACA AGGTGTTGAG
  Y
  GTTCTACAGC ATTCAGGAGA GACCCACCAC TAACACACAC AGCAGAGAGT TATCCAGCCC
  AAACTGTCAA TAGCACAGAT GCACTAGGAG TCTGGTTTAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640788	NES13617952	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38613667					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640788	NES13617952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15780177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10648	CpG island 10648	560 bp distal
Gm50348	predicted gene, 50348	245 bp upstream
Gm54054	predicted gene, 54054	302 bp upstream
Rr406864	regulatory region 406864	within coordinates
Rr544631	regulatory region 544631	367 bp distal
Rr544632	regulatory region 544632	755 bp distal
Rr544633	regulatory region 544633	within coordinates
Rr544634	regulatory region 544634	256 bp proximal