rs38613835 SNP Detail

Summary

• ID
  rs38613835
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:58085426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTCTCA ACCTTGTTTC
  TTTTTCTCGG GAGTCTGTGT AGGTAACTGT CATTTGTAAG AGTTGCCATA AGGTATTGAA
  GAATGAACAG TTTCTGTCAT TCCTTCTTAC AGAAATATGG CTAGGAAGAA GCCTTCAAAT
  ATTTGCTCTT AAAATAAAAC CATAAAAGGG CTGGAGGTAT GGTTCAGTCA GAAAAAAATG
  Y
  TTGCCTAGTA TTCATGGAGT CCTAGGTTCA GCCCCTAGCA AGACAGGAAA CTGGACATGG
  TGGTGCATCC CTGTAGTTCT AGTACTCAAG AATAAGAAGC AGGAGGACCA GCCGGGCGTG
  GTGGGACACA CCTTTAATCC CAGCACTTGG GAGGCAGAGG CAGGCTACAC AAAGAAACCC
  TGTCTCAAAA AACACCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51514319	NES14631854	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38613835					SNP	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51514319	NES14631854	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:58085426 () rs orientation: forward

Symbol	Name	Function Class
Rr289493	regulatory region 289493	426 bp distal
Rr289494	regulatory region 289494	975 bp proximal
Rr389711	regulatory region 389711	within coordinates
Tssr128980	transcription start site region 128980	814 bp upstream
Tssr128981	transcription start site region 128981	1121 bp downstream
Zdhhc20	zinc finger, DHHC domain containing 20	within coordinates