rs38615786 SNP Detail

Summary

• ID
  rs38615786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:34271170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGCAAA AGCTGTGCCG
  GTGTCTAAAC TCCCTCACCC ACTTATTTTA CTGTTAGAAT CAGCATCACA GGAAGAGCAT
  GACCTCTGCT AGGGAGCATC AGCATTTCCA GACAAAGAAT GGCTGACTGT ACTGCTGGTC
  AAAGGTGCAG AAAGGATATC ATATTCACAG CCATCAGGCC GAGGTCTGCA TTGAGCTGGT
  Y
  TGAGGAGTGC AGTCAGGCCG TCAGCCTATT TATGGTGACT GACACCAGGA TAGGTGAGGT
  CATCATAGAT GGGTGTGGTC AGCTTCAGTG TGCAGAAGCA GACAGATGTC ATACAGGGCC
  TCGGTGATGC AATAAGTTTC ACCTGTGTTC TCCACCAGCT GGTACCCAGA AAGGTAGGGT
  ACCAGCTTTA TAGGGTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51083427	NES14363162	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38615786					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51083427	NES14363162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:34271170 () rs orientation: forward

Symbol	Name	Function Class
4930447K03Rik	RIKEN cDNA 4930447K03 gene	within coordinates
Gm47065	predicted gene, 47065	within coordinates