rs38620567 SNP Detail

Summary

• ID
  rs38620567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43485485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGCCCA TCCCACCAGT
  GCACAAATGA TTCTCAACAG CCAGGCCTCT GTCCCTCTCT TCTGTATGCA GGGTCCCTCT
  GTCTCTGATC AGCTTCCTCC CCATCCTGGG TTCTGTTCAT TCACAAATCT ACACAGTGAC
  TCATGCACCC TAGGCCCCTC CTCTAGACCT GTAGACAGTG TTTGACTTAC CAGCTTCTCC
  R
  CAGCCTTCAA GGCTTACATA AAAAATACAT CTCCACCACT TTTGTTGTTG TTGTTTTGTT
  TTTGAGGCAG GGCTTCTCTG GGAAGCCTTG ACTGAGCTGG AACTCACTCT GTAGACAAGG
  TTGGCTTAAA AACTCAGAGA TCTTCTTGCC CGCCTCTCTC TCCTGAGTGA TGGGATTTAA
  GGCATGCACC ACCACCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51818962	NES14536922	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38620567					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51818962	NES14536922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43485485 () rs orientation: forward

Symbol	Name	Function Class
Rr516192	regulatory region 516192	486 bp distal
Tigit	T cell immunoreceptor with Ig and ITIM domains	976 bp upstream
Tssr138525	transcription start site region 138525	563 bp downstream
Tssr141140	transcription start site region 141140	1891 bp upstream
Tssr141141	transcription start site region 141141	996 bp upstream
Tssr141142	transcription start site region 141142	981 bp upstream
Tssr141143	transcription start site region 141143	964 bp upstream
Tssr141144	transcription start site region 141144	714 bp upstream
Tssr141145	transcription start site region 141145	87 bp upstream