rs38623146 SNP Detail

Summary

• ID
  rs38623146
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:121838705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGGTGG AGCCAGGAGA
  AGGTAAGTGT TTCCCCACAC AGTAATATTT CCCCAACTCA GTGTCCACAT ACTCACCAAT
  GGAATCTTAC CACTGAGCAA GTCACAGTGC CATAATGCTT GTGTGTCTCC ATAGACACTC
  TCCACAGTGG GAACTCATGG CTTTGCTGTC CAATGTAAGT TCTCAATCAT AACATGACCT
  K
  CAGGAAAGTC TCAGGGTCCC AACCTGAGTA TCATTCAACA TGGTGAAATA TCTATTCTGA
  ATATGTAACA CCTGAATACA CAAAGTACTC CAAGATAGAA TCTACATGAG GAACTTATGC
  ATTCACATAC TGATAATTCC CAACATGGCA AAAGAGTTAC CTTAATGTTG GTCAAAAAAA
  AAAAAATCAG AATTCGTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51861265	NES14879036	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	T	T	T	G		T	G	G	T		T
ss133606758	ENSMUSSNP3701913	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321933466	CHEV_6_121811764	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38623146					SNP	G	G	G	G	T	G	T	T	T	G	G	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51861265	NES14879036	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:121838705 () rs orientation: forward

Symbol	Name	Function Class
Mug1	murinoglobulin 1	within coordinates
Tssr58645	transcription start site region 58645	609 bp downstream