rs38623524 SNP Detail

Summary

• ID
  rs38623524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:116589858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCATAT TGGTTCCCAG
  AAACACTTTC CCAAACTGTC AAACACGGCA CACAGGACAA ACCCTGACTT CATCCTAGCA
  CCTGCATCCT GGCATGACAA AGACATTCAG GCCAGGGCAG ACCAGGACCT CTAACAGCTT
  CCAGAGACTT CTTTACTCTC CCAGCTCCAA CCATGGTAGC TTTCATTCTC GTGCCTGACT
  Y
  GGGGCCTTGT AATGTGTCAT GTTCTCTGCC TTGGACCTGG TTCCTTTGTT CATGCCACCT
  GTTGCCTGAT TCTCATTTAT TAGTGTTCTG CTCAAACACG ACTTGTTGAA GAGAACCTGT
  CCCTTTGGGT TAGGGCGGGT ACTTTTATAT CCCATGTAGA GTGCTCTTAA GCCTTCTTGG
  GATTGTTATG ATTATAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
ss51925354	NES14938212	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ
rs38623524					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51925354	NES14938212	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:116589858 () rs orientation: forward

Symbol	Name	Function Class
Rr381374	regulatory region 381374	130 bp upstream