rs38623883 SNP Detail

Summary

• ID
  rs38623883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113097696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTAAAAC TAAAACTCCT
  AGTTAGAGGA CTTTGTGAAC ACTAAAAACT GAACCCCAGT CTTTGCTGCA AGAGCACCAA
  GTGGTGTTAA TTGGGGATTA ATCTTCCAGC CTTAAGGATT AATTGAAAAT CATTTAGAAT
  GCTTTAAATA GATAGAAAAC TAAGAAACAG GTAAGACATT TCTGATGCTA GGTGAGAGGA
  R
  CCTTGTCTAA TCCTAGTACT CAGCAAACTA AGGCAACCTG GGAGATCCTG TCTGCAAAGG
  AGAAGAGAAT TTTCTAGTAA ACATTTGGCC TTGATATTGT TACAGGATGT AGCTGCAGAA
  AAGCCAATCC CTAAACCACC TCCAGCTAAG CCTTCTAGAC CCCGACCGAA AAGTAGAATT
  TCTCGGTACC GGACCAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843650	NES14765193	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38623883					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843650	NES14765193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113097696 () rs orientation: forward

Symbol	Name	Function Class
Rr132137	regulatory region 132137	1696 bp distal
Setd5	SET domain containing 5	within coordinates
Tssr58173	transcription start site region 58173	239 bp upstream