rs38625630 SNP Detail

Summary

• ID
  rs38625630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45825366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGAGGAA TAAAGGGAGT
  ATTTGCTTCT ACAGCAAAAG AAGGCAAAAT GCTTCTAACT TTACCTTTAA GCAACAAACA
  TAAAAGTGTT CTCAAATCTA GTTTATATAA TCTGCTTCAT TTCGAAAAGA GTACTTTGTT
  ATAGTCTGTC AGGTCTGTAT TTAACTGAGA CAGGAGAGGC TAGCTTTTAA TTTTCCTGTC
  Y
  TTTTATATTT TTGTTGTTTT CATTTCAAAG AGTCTGCATG TTAAAAAAAT CAACAAGAGG
  TATAAGACAT ACAAACTTTA CATACACTAA TTATATTGCT ATTTTCTTTT ATATTTCATG
  TATATACAAA ACAAATTAAG CACATCTAGT CTAAACATTT TCCCGTATAG TTGTTTTCAA
  GAATTACTTA TCTAAAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51715844	NES14748593	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38625630					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715844	NES14748593	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45825366 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	678 bp downstream
Cpgi15841	CpG island 15841	1221 bp proximal
Ncapg	non-SMC condensin I complex, subunit G	1895 bp upstream
Rr367838	regulatory region 367838	1558 bp upstream
Rr611093	regulatory region 611093	322 bp proximal
Rr611094	regulatory region 611094	466 bp proximal
Rr611095	regulatory region 611095	871 bp proximal
Rr611096	regulatory region 611096	1405 bp proximal
Rr611097	regulatory region 611097	1646 bp proximal
Tssr46141	transcription start site region 46141	1860 bp upstream
Tssr46142	transcription start site region 46142	1883 bp upstream
Tssr46143	transcription start site region 46143	1980 bp upstream