rs38627261 SNP Detail

Summary

• ID
  rs38627261
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:97005075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATGATA GAGAGTAAGA
  GAGCTACAGA GACCTAGTGA GAAGGGAAAA AGGAAACTTT CCAAGTCCTG TGGTCACCAA
  GCTACTTTGA TGACAAGGAC ATTTATAAGA GCAGAACTTT CATTACCTAA CACTTCCAAG
  AGTTCTTGCT GTTCAACACT GTTATATTAC AGAAAGAAAA TGTGTCCACA AATAGACTTC
  K
  GGAGACACAT TTAAACCATA GCACTTACTT TTCTAAAATG TTACCAGTCT ACATTATTTT
  TCTTCTTTAG ATTCTTTTGT TTTCCTCTTG GTTTTTGTTC TCTATATTTT GGAATTCTCT
  TATTAGCTAT GTATAAATTT AGTTATTTTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50907030	NES14162659	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38627261					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50907030	NES14162659	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:97005075 () rs orientation: forward

Symbol	Name	Function Class
D10Mit142	DNA segment, Chr 10, Massachusetts Institute of Technology 142	1703 bp distal
D10Mit142.2	DNA segment, Chr 10, Massachusetts Institute of Technology 142.2	1822 bp distal