rs38627397 SNP Detail

Summary

• ID
  rs38627397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35027205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAAGTA AGGTTATGGA
  TGGTGTTTCA CTAGCAAACT CACAACATTC CCTCTGTACC CCTGATACTT ACACATATCA
  ATTCGTTTAC AACCCCCTGG GTAGAGAGGC CTGGAGGGGC CAAGTGGGAT CTGTAGCACT
  GACCCTGCCC TGTGGTATTG GTGTGTGCCC CTTGTGAGAG ACAACTATCA CTGTGGTACT
  R
  TTCAAACCCA GACTAGCCTT TTAAGCCTGA CCGGGGGGAG GGGGGGGGGA GGATCTAGCC
  TAGAGGACAG AGAACAGAGT AGATCAGACT CATAAACCAG AAAGTCTACC CCTCGGTCTG
  GGAGGAATGG CAGTGGTACA AGACACGTTG GCATCTCGGG GCTGCCCATA GGTCTCAGCC
  AGCAAGGGTC TCAGAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50670785	NES14013371	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A		G	A	A	G		A
ss322899094	CHEV_9_34923494	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38627397					SNP	A	A	A	A	G	A	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670785	NES14013371	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35027205 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	819 bp upstream
Cpgi21550	CpG island 21550	344 bp proximal
Gm57537	predicted gene, 57537	1291 bp downstream
Rr676432	regulatory region 676432	329 bp proximal
Rr676433	regulatory region 676433	840 bp proximal
Rr676434	regulatory region 676434	954 bp proximal
Rr676435	regulatory region 676435	1136 bp proximal
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates
Tssr84325	transcription start site region 84325	831 bp upstream
Tssr84326	transcription start site region 84326	1021 bp upstream
Tssr88717	transcription start site region 88717	851 bp downstream
Tssr88718	transcription start site region 88718	895 bp downstream
Tssr88719	transcription start site region 88719	1066 bp downstream
Tssr88720	transcription start site region 88720	1785 bp downstream