rs38629093 SNP Detail

Summary

• ID
  rs38629093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131015865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTAGT TCGCACCAAA
  ATCCTACGGA AGGCGCTTGG CCACCCACTT TTTCCCATGG TCACAGCTTC TTTCAGGTCG
  TCTGATGTTC CAATTCCTTT CCCTCCTCAG TGAGAGCCGA AGGAGCCCAC CACTTAGAAT
  TAATCTTTTA GAGGAATGGT CTACTTGTAA AGGGGGATAG AGCAACCACA AACACAGAGA
  R
  CTGGCTTCAT CTGAGGCTGT CACAGGTTCC GGATGGGACG CAGGGTTTCT TCACCTCTGC
  CTCAGGTTCA AAGCCATGGG GACTAGTGCG GCCTGGCGTG AAGGAACTGA CCATGCCTTT
  GGTTTCCTCT GCCTCCATTG GTCATGGCGT CTCATTTGAC CTTTAATCAA CTGGTAAAAT
  CTCAGGTCAC TAAGACTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634220	NES14648971	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38629093					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634220	NES14648971	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131015865 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Tssr31723	transcription start site region 31723	575 bp upstream
Tssr31724	transcription start site region 31724	1612 bp upstream
Tssr31725	transcription start site region 31725	1722 bp upstream