rs38629602 SNP Detail

Summary

• ID
  rs38629602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83483925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACCGATG TTGCCTTCAA
  TGCAGAGCCT TCGGGGGCCG CCCCCGTCGT GCATGGCCCT GGCGTGTGGC GCGTCCACGA
  GCGCGTTCCG CAGCGGGGAA CGGAAAGACG CTCGGAGACG ACGCAGAAGG AACCGACCTG
  CAGCCATCCT ACCCAAGCCG AGCAAGGCGG GCACTTCCGC CGAGAGCACT TCCGCCTGCG
  R
  TCAAGCGACG CCAGCGCACC TTTGACGTCA GAGGGCCGTC AGGCAGGAAG TGGCTGGTTT
  TAGCTCTCTA GGCGGGTGAG GCCGCAGGAG CTGCTCTGTT CTCGCGACAT TTGCAGGGAC
  GATGTGGGAG TGTCTCGGTG TTGTGGTGTA GGAGGGTGTG CTGAAGTAGA GTTCAGGCGT
  CCGTAGCCCT CTCATCGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354499	NES13746144	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38629602					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354499	NES13746144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83483925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	within coordinates
Dguok	deoxyguanosine kinase	38 bp upstream
Rr399724	regulatory region 399724	within coordinates
Rr632884	regulatory region 632884	1086 bp distal
Rr632885	regulatory region 632885	16 bp proximal
Tssr1908	transcription start site region 1908	138 bp upstream
Tssr61663	transcription start site region 61663	683 bp upstream
Tssr61664	transcription start site region 61664	120 bp upstream
Tssr61665	transcription start site region 61665	108 bp upstream
Tssr61666	transcription start site region 61666	93 bp upstream
Tssr61667	transcription start site region 61667	67 bp upstream
Tssr61668	transcription start site region 61668	49 bp upstream
Tssr61669	transcription start site region 61669	16 bp upstream