rs38638691 SNP Detail

Summary

• ID
  rs38638691
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45313515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGATTTCC AGTTGGGAAC
  ACATGACAGG GTCACCTCAC AGGTGGCTGG GCTGCAGGGC GGGGGCGTTG CCAGCTCAGA
  GTCCTAAGAC AGACCTCAGC CTAAACAGAG AACTCAGCTA GCGGGTCAGG CCAACATTTC
  TGAGTGCCTT CATCTCCCTG GGGCTGTCAT TAGTCCCCCT CTTAGGGAGC TTTTGTGAGG
  R
  AAAAGGAAGC TAGTTGTCAG GGTGACCAGA CCCAGCATTA CTCATGCTCT GCTGGTATTC
  CCACTAGGAT GATCTTGAGA GCCTGGAGGA GACCCTGTGG TCCAGTCTCA GCCAACAGTG
  GCTTCTTACA GTAGACTTGC TTGGGCCTGT CACTGCGGTC AGGGCACAAA GACTCTGGGA
  GGCACTAAGT CCTTGGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013372	NES15030343	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38638691					SNP	G	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013372	NES15030343	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45313515 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	115 bp distal
Rr200381	regulatory region 200381	315 bp distal
Tssr84783	transcription start site region 84783	348 bp upstream
Tssr84784	transcription start site region 84784	398 bp upstream
Tssr84785	transcription start site region 84785	925 bp upstream
Tssr84786	transcription start site region 84786	957 bp upstream
Tssr84787	transcription start site region 84787	979 bp upstream
Tssr84788	transcription start site region 84788	1010 bp upstream
Tssr84789	transcription start site region 84789	1036 bp upstream