rs38640517 SNP Detail

Summary

• ID
  rs38640517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151959864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATTAAAAT TAACACCACT CCCTTAGAAA TTAAAAAGGT
  CAGTAAAGTG TATGAATTTT GATTGGGTTT TTGAGGTAAG TCCATACTGC AGGCAGCACT
  R
  TCGTTGTCAT AGCATAGGCA AAGCTGAAGG CCAGTTCAAC CCCACAAGAG ATAAGTCGTG
  TCTCCTGTCG CACCACCTGT GTGCAACTTC CAAAAAACCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060220	NES13426061	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38640517					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060220	NES13426061	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151959864 () rs orientation: forward

Symbol	Name	Function Class
Gm43185	predicted gene 43185	1424 bp upstream
Nexn	nexilin	Intron
Tssr1100	transcription start site region 1100	1314 bp downstream
Tssr32404	transcription start site region 32404	586 bp downstream
Tssr36193	transcription start site region 36193	1378 bp upstream
Tssr36194	transcription start site region 36194	1264 bp upstream
Tssr36195	transcription start site region 36195	1151 bp upstream
Tssr36196	transcription start site region 36196	1124 bp upstream
Tssr36197	transcription start site region 36197	1093 bp upstream
Tssr36198	transcription start site region 36198	537 bp upstream
Tssr36199	transcription start site region 36199	513 bp upstream
Tssr36200	transcription start site region 36200	477 bp upstream
Tssr36201	transcription start site region 36201	461 bp upstream
Tssr36202	transcription start site region 36202	415 bp upstream
Tssr36203	transcription start site region 36203	1106 bp downstream
Tssr36204	transcription start site region 36204	1128 bp downstream