rs38640761 SNP Detail

Summary

• ID
  rs38640761
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132286553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCACCAA AAAGATGTGG
  CAAATGAAGG TGGCCTTTAC CCACTGGTTT GCCTTTATAT AGTGCACACA CTTGGGCGAA
  GACTTACGTT GCTCTTATCT CTACCCCACG AACACTCCCC TCTTTGGCTT CCTGTACCAA
  TTGGCCCCAT GGATATGTTT CTGCTCGTCG TGTTCCATGT GATGTGTCCA CCTCCACACT
  S
  TCACCTGTAC CCTGTGCCTA CAGATAGGGC AGTTGCTGTT GGCTCTGTCA GCATATTGGG
  ACCTCCCCAG AGTGGTCCTG GCCATACCTG GATATCCCGG GCCCTCTCGT AGGACTGGTA
  GGCCACCTTC TCCTCCATGC TGGCCAGCTC CTGCTTTAGG TTGGTCATTT CATTCTGGTG
  AAGCTCAGTC AGGTCGTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373306	NES14476096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38640761					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373306	NES14476096	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132286553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi727	CpG island 727	1681 bp proximal
Tmcc2	transmembrane and coiled-coil domains 2	within coordinates
Tssr13633	transcription start site region 13633	1313 bp upstream
Tssr13634	transcription start site region 13634	1260 bp upstream
Tssr13635	transcription start site region 13635	1155 bp upstream
Tssr13636	transcription start site region 13636	559 bp upstream
Tssr13637	transcription start site region 13637	85 bp downstream
Tssr13638	transcription start site region 13638	1500 bp downstream
Tssr13639	transcription start site region 13639	1856 bp downstream