rs38640849 SNP Detail

Summary

• ID
  rs38640849
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60193536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATTGCCT GCCAGGGAGC
  TGGGGCTGGG ACTCATGCTC TACTTGGGAG AAGGCCCCAT GTTGGCTGGC CTGTCTTTTG
  TCTGGCTCCC CTCCCACTTG GGAGGCCTGG AGGCTTCTCC CATGTGGGTC TTGTTACTAA
  GCAAGAGGCC AAGGCTCAGA TCAGCTGGCT TGCCCAGGGT CTGGCTTGCA AGGGAAGAGG
  S
  TGAAGTCACG CTTTCTCATC TGGAGGGCAG CGAGGAGTGC CGCTCACTCA GGCAGGTGAC
  AGGGGTGCTC TTCTCTCTGA ACAGGTCTGG TAGCAGCCTT CAAGGTCACC ACTCCATATT
  CTCTCTATGT GTGTCCCGAG GGACAGAATG CCACCCTCAC CTGCAGGATT CTGGGCCCCG
  TGTCCAAAGG GCACGATGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	CAST/EiJ	KK/HlJ	NZW/LacJ
ss50866538	NES14171030	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	CAST/EiJ	KK/HlJ	NZW/LacJ
rs38640849					SNP	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866538	NES14171030	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60193536 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Tssr93621	transcription start site region 93621	227 bp upstream
Tssr93622	transcription start site region 93622	339 bp upstream
Tssr93623	transcription start site region 93623	725 bp upstream
Tssr97721	transcription start site region 97721	290 bp downstream
Tssr97722	transcription start site region 97722	457 bp downstream
Tssr97723	transcription start site region 97723	492 bp downstream
Vsir	V-set immunoregulatory receptor	within coordinates