rs38642473 SNP Detail

Summary

• ID
  rs38642473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69843798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCACCA TGCCTCCCTG
  TATCTGCTAT GCTTCCTGCC ATGATGACAA TGGTCTAAAG CTTTGAACTG TAAGCCAGCC
  CCAGTGAAAT GTTTTCCAAA TAAGAGTGGC TGTGATCACA GTGTCTTTTC ACAGCAATAG
  AAATCCCAAG TAAGACTCCA GGACTGTTGT GAATGGCTGC ATAGGACTCT TGGTTTGCCT
  R
  AGTTGGTTGG GCTTGGAAAA AAATGGTCAG CAGTAGTAGA GAGACCAGTA TCAAGTAACC
  AGATAGCTTT CTGTTCTGAG AAGCATCATT TATTGCCTTA AAAACCAGTT TTCCCCCTAA
  AGCTTGCTAC TCGTATTGAA TTGTGAATTT CAATAATACA GACAACTGGG TTATGAATTA
  TAAAATAAAT TCTATGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50977320	NES13926067	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38642473					SNP	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50977320	NES13926067	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69843798 () rs orientation: forward

Symbol	Name	Function Class
Rr578246	regulatory region 578246	474 bp proximal
Rr578247	regulatory region 578247	668 bp proximal