rs38644044 SNP Detail

Summary

• ID
  rs38644044
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102058465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATACAGC AAACCTTCGT
  GACACAAAGA GACTTGTGTA CATGGCAAGG AGCCATATAA TTCAGTCATT TATATGTTCA
  AAAATGTCCA GTGAGAGTGC AACATATATT CAGACGTGGT CATACGCACA TGGTATCTGC
  TGACTGTAAG TACAGGCTAA GCCAGAACTG CCTCTCTTGG TTATAAAGCA CGGCACTAAA
  S
  TATTCAAGAA TAATATGGTC TCTGGCTATC TATTTTGTAT TGTTGGACTC TACCAGATAA
  GGATCAAAGT TGGGTTCAAA ATTCAGAGAT TAAAATCCTT GGTAACAAAA ACCTTTCCCT
  TAAAGCCTGG CCCAGGTATC TCTGGTCTGA TCCTTATCAG AGTTCAATTC ATACCCTGGG
  TGGGACAGTG CCTGCCATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51587501	NES14668409	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38644044					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587501	NES14668409	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102058465 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	within coordinates
Rr582191	regulatory region 582191	843 bp distal
Rr582192	regulatory region 582192	1050 bp proximal