rs38646240 SNP Detail

Summary

• ID
  rs38646240
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5846147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAAGACA CCGCAGGGAC
  TTGAACCCCG TCCTGGAAAC CAGGAGTGCC AGCCACCAGC GTCTTTTGCT TTTTTTTTTT
  TAAAGCTAGG GAAAGGCCAA AAAGCAAAAC CTGAGAAAAC AAAAGGTTGT TTTCTCAGGA
  AAAGAAAAAC CTTTACAACC CTACTGACGA ATCTGCTTCC ACTAAGATGC TAGCTTGGCC
  M
  AGTCTGTTAT GTCCACCTGA AAAAGTCTTA GCAGAGAATT TTTGCAATCC CACCCCAACA
  ACTTCCTACA AAGGCTTGCT TTTCATCCGA CTTCCTACAT TCCCACCCAG CACTGGTATC
  AAACATACTA TACCCATACT GGTTTGTTTA CTCTGCATAG GTGCTATGTA TAAAACATCT
  TAGCTATGGT TTTAATGTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577508	NES13649155	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38646240					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577508	NES13649155	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5846147 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	138 bp upstream
Tssr5415	transcription start site region 5415	715 bp downstream
Tssr5416	transcription start site region 5416	1191 bp downstream
Tssr157645	transcription start site region 157645	234 bp downstream
Tssr157646	transcription start site region 157646	264 bp downstream
Tssr157647	transcription start site region 157647	426 bp downstream
Tssr157648	transcription start site region 157648	592 bp downstream
Tssr157649	transcription start site region 157649	692 bp downstream
Tssr157650	transcription start site region 157650	751 bp downstream
Tssr157651	transcription start site region 157651	805 bp downstream
Tssr157652	transcription start site region 157652	942 bp downstream
Tssr157653	transcription start site region 157653	1059 bp downstream
Tssr157654	transcription start site region 157654	1102 bp downstream
Tssr157655	transcription start site region 157655	1139 bp downstream
Tssr157656	transcription start site region 157656	1169 bp downstream
Tssr157657	transcription start site region 157657	1291 bp downstream
Tssr157658	transcription start site region 157658	1343 bp downstream
Tssr157659	transcription start site region 157659	1446 bp downstream
Tssr157660	transcription start site region 157660	1599 bp downstream
Tssr157661	transcription start site region 157661	1620 bp downstream
Tssr157662	transcription start site region 157662	1725 bp downstream
Tssr157663	transcription start site region 157663	1784 bp downstream
Tssr157664	transcription start site region 157664	1906 bp downstream
Tssr157665	transcription start site region 157665	1913 bp downstream
Tssr157666	transcription start site region 157666	1938 bp downstream