rs38650435 SNP Detail

Summary

• ID
  rs38650435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:81122873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTACCTT TATCTGTGCC
  TCCTTTCATG TACAGTATGT GTGATAGACA GACACCAGTG TCTCATTACA TGACCACCCA
  CAGAACATTA CCCAATGTGA CATTCTTCAG GGGAAATTAG CAGAAATGTT TCACCACATC
  AGTCTCTTCC AAGAGCAGTG ATTCACTAAC AGTACTTAAA AACTGACCAG ATGCCCAGGC
  R
  AGCTTCTCTC CTCTGCTGTT TTGACTGGGG CGGGGGGGGG GGCATAATAA ACACCTCACA
  TTCTGAAGCC TCTGCAGGCA GAATCTGGGT ACAAAAAAAG AGGCACGTTT ACACAAAGAA
  ATATGCACCA AAGGTACACA TACCATACAC ACACATACAT ACACACAAAC ACTCCACATA
  CACAAACACA CACCCAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51970013	NES14987267	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38650435					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51970013	NES14987267	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:81122873 () rs orientation: forward

Symbol	Name	Function Class
Gm30605	predicted gene, 30605	1059 bp upstream
Tssr81895	transcription start site region 81895	1182 bp upstream
Tssr81896	transcription start site region 81896	1135 bp upstream
Tssr81897	transcription start site region 81897	1125 bp upstream
Tssr81898	transcription start site region 81898	1110 bp upstream
Tssr81899	transcription start site region 81899	1079 bp upstream
Tssr81900	transcription start site region 81900	1052 bp upstream
Tssr81901	transcription start site region 81901	1039 bp upstream
Tssr81902	transcription start site region 81902	1016 bp upstream
Tssr81903	transcription start site region 81903	1004 bp upstream