rs38651842 SNP Detail

Summary

• ID
  rs38651842
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190793606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATTCTA GCTTACCTTC
  CTGGCTTTCT CCAACACATC ATCCAGATCC TACAACAAAC AGAAGCAACC ACGTTTGTTT
  TACACGAGTA ATTAACTGCT CTTGGTCCAT ATACAGGCAG CAGAGGCACC ATTAAGGACA
  ACATTGTTAG CAAGGAACAG AGTGGCAGAA AATGAAGTCA CCCTCCTCCT TACTCTCACA
  S
  TCCATGATGC ACACTATATC AAAACAGAGA TCTCTGTTGC CAAACACACA GAGCTTTCCT
  GTCCTCTCTC ACTCTGTCCC TCAGAGGCTT CTGGACATTT CCCTCATGAT TTGCTTTCAC
  AGCCTAGTGG TAGGTAACTC TTCAGTCTCC TTGACTGATT CTCTGTCCTT TTTGTGACTT
  CAAGCTCTTC TGTTCTCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51423916	NES14444388	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38651842					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51423916	NES14444388	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190793606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1216	CpG island 1216	1190 bp proximal
Nsl1	NSL1, MIS12 kinetochore complex component	1104 bp upstream
Rr29190	regulatory region 29190	594 bp proximal
Rr396711	regulatory region 396711	1463 bp upstream
Tatdn3	TatD DNase domain containing 3	within coordinates
Tssr10722	transcription start site region 10722	1592 bp upstream
Tssr15751	transcription start site region 15751	1467 bp downstream
Tssr15752	transcription start site region 15752	1487 bp downstream