rs38655805 SNP Detail

Summary

• ID
  rs38655805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44842271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAATGA GGCAGAGCAA
  AAAATGACTA CCTCCAAGCT GTGTTCCATG AACCTGGATC CTGGTAGATC CATCCACAGA
  GATGAAAAGA GGGTCTGATT TGGGACTGCA AAAAAGGAGC ATGACTTTGG ATATTGAGAA
  TCCCATGCCT GAGATGGGCA TGCCTGGGCA TGATGCCCCA TAAACAGAGT TACAGGGAAA
  Y
  GACTCAGGGC ATTGGGAGAT ATATACTTCT GCCCCAGTCT TCTACCCACT ACATTTGTAT
  TTCAGTATGA TTGGTCCTTA TAATTCTTCA ACTGAATAAT AGTAAAATAC CAAAGCATAA
  TAATCCCATA ATATGGCAAA GATGTTTCCC CATAAAGGGG CAAGTGAAGA TGTAGGGTGG
  TAATGATACA TTCTAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50797993	NES13526757	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38655805					SNP	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50797993	NES13526757	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44842271 () rs orientation: forward

Symbol	Name	Function Class
D19Mit27	DNA segment, Chr 19, Massachusetts Institute of Technology 27	661 bp distal
Gm5246	predicted gene 5246	1856 bp downstream
Rr394467	regulatory region 394467	within coordinates