rs38657015 SNP Detail

Summary

• ID
  rs38657015
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:81443004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAAATATA AAGTCAGTTT TCTTAATTTT CTGAAATTAG
  TTATTTGAGT TAAAAAGAAT TTTGTAGGAA TACTCACCCA TCTCATCTAA CTTTCAAAAC
  W
  GTTAAAACAA AAGTTTTAAA AATCAAACAC CCACATCTGC TATTATGACA AGAATCTCTC
  AATTCCCAAA CTACTGAAAG ATCACGAGTC AGCGGATCTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50427613	NES14133573	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38657015					SNP	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50427613	NES14133573	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:81443004 () rs orientation: forward

Symbol	Name	Function Class
Btbd1	BTB domain containing 1	within coordinates
Gm45016	predicted gene 45016	within coordinates