rs38657494 SNP Detail

Summary

• ID
  rs38657494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95722624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA AGCTTCCAGG TTTAGGCAGC
  Y
  TCTCTGTAGG TGCCACCTGG CTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51973972	NES14993125	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38657494					SNP	T	T	T	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51973972	NES14993125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95722624 () rs orientation: forward

Symbol	Name	Function Class
Adgrg1	adhesion G protein-coupled receptor G1	within coordinates
Tssr78944	transcription start site region 78944	1669 bp downstream
Tssr78945	transcription start site region 78945	1606 bp downstream
Tssr78946	transcription start site region 78946	1563 bp downstream
Tssr78947	transcription start site region 78947	1275 bp downstream
Tssr78948	transcription start site region 78948	1207 bp downstream
Tssr78949	transcription start site region 78949	1193 bp downstream
Tssr78950	transcription start site region 78950	1144 bp downstream
Tssr78951	transcription start site region 78951	375 bp downstream
Tssr78952	transcription start site region 78952	302 bp downstream
Tssr78953	transcription start site region 78953	248 bp downstream
Tssr78954	transcription start site region 78954	235 bp downstream