rs38658980 SNP Detail

Summary

• ID
  rs38658980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:62375511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCTACA TATACACACA
  TGAATGAAAA TAAAAATCTT TTTAAAAAAG ACACACTTTA CCATGTGATG GAACTATCTT
  AATCCTGAGT ATTTACACAG GAAGTTAAAA CATGACAACT ATATATACAC TTAGAGCAGC
  TTTATTCATA AAACAGTAAA AATGCAGAGA ATAGATGAAA TGTCCACCAA GTGGTAAATG
  R
  ATACAATGAC ATAACCATAA AAGGGAATAC TAAACAATAA AAATTACTAA TATGTACAGT
  AAGCACGAGC CATCTCCATG CTTATATTAA ATGAAAAAGG CTGGACACAT GGACTGTGTG
  AATCCATTCC CAGAAAACCT ACAAAAGACA AAAGTATTGA CGAAAAGCTG CTCCCTGGGC
  ACCAGAGGGT AGAAGCAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51531107	NES14690709	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38658980					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51531107	NES14690709	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62375511 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dhx36	DEAH-box helicase 36			mRNA-UTR
				Noncoding-Transcript-Variant