rs38659680 SNP Detail

Summary

• ID
  rs38659680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47449669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACAGGCT CGGCACTCCA
  TCGAAGCAGG CATAGAAGGA GACATGCTTT CCCAGTGTGG GGTTTGCCAC ACATATGTAC
  AAGGTGTCCT GCCGGCTAAC CATGCTGGAA TGCCTCTTTC ACAACACTTG CCCTTCCAGG
  ATGGGGTATC TACTATACAA GAGGTATAGA AAAAAAAAAA AAAACAAAAC TGCCCGAGAG
  Y
  CCTCCTGAAC TCTTTCAATT ATTGGGCACC AGTGTATTAT ATATCAGTGC TCAAACTGTG
  TAGCAGTGTA TCTCTCTTCT TTGTCAACTT CAACCAGATT TGGGGTATCT TCACCCACAC
  CACAGGCTGG AAGTCCGTCC GTTAGCCCCA GTGCTGTGAC TAGGTAACCC ACCTGCTTCT
  CTGTCATCCC CTTATCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50859942	NES13511562	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38659680					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50859942	NES13511562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47449669 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	1507 bp downstream
Rr549060	regulatory region 549060	1994 bp distal
Rr549061	regulatory region 549061	286 bp distal
Rr549062	regulatory region 549062	376 bp distal
Rr549063	regulatory region 549063	211 bp proximal
Rr549064	regulatory region 549064	800 bp proximal
Rr549065	regulatory region 549065	1937 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	607 bp upstream
Tssr159730	transcription start site region 159730	463 bp upstream