rs38663791 SNP Detail

Summary

• ID
  rs38663791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70406614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGCCAAAGA TACTGAGTGC TGCCTGGAGC ACTGATCCCA
  GATGAGAGGA AATATAGGCC ATTCCCAGGC AAACTAGCCC ATAGGCAAAG GCAAGGCTTC
  R
  AGAAAGCATG ATGGCCCGAG TTTCAGTCAA CTGTGGGAAC CAGGGCTGGA TCAGGTCTTC
  CATTGTGACA GTTGCCAGTG AATTGAATGC AGAGGATATG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51678219	NES14821837	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38663791					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51678219	NES14821837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70406614 () rs orientation: forward

Symbol	Name	Function Class
Gm6157	predicted gene 6157	within coordinates
Igk	immunoglobulin kappa chain complex	within coordinates
Tssr61316	transcription start site region 61316	338 bp downstream