rs38664231 SNP Detail

Summary

• ID
  rs38664231
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127921545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATCATG GAGCTAATCA
  ACAATGTCGC CAAAGCCCAT GGTGGTTACT CTGTATTTGC TGGTGTTGGT GAGAGGACCC
  GTGAGGGCAA TGATTTATAC CATGAAATGA TTGAATCTGG TGTTATCAAT CTAAAAGATG
  CCACTTCCAA GGTGAGCTCC ATTCAGAAAA CTAATGTGTT ATGTTTGATG TGATGAGCCC
  M
  GGGTTCTGTA AACAAAATAG TTGTCTTCCC ACCACCATTT TCCAGAATAC CAGTGTACAC
  TTCTCTGGTG TGAGATATTT CTAGACTTTT TGATGAGTAA GTAATCCAAT TTGAAAGCTG
  ATTTAAAAGG TGTAGAATGG AAGCCACTCA CATATCTCAG TCTTACTTTT AGTTTAGAAA
  TTATTTCCAG TGTTCTCAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50944565	NES14144921	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38664231					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944565	NES14144921	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127921545 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	1529 bp distal
Gm55458	predicted gene, 55458	316 bp downstream
Mir677	microRNA 677	313 bp downstream
Rr441098	regulatory region 441098	793 bp proximal
Rr441099	regulatory region 441099	893 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	1460 bp downstream
Tssr96320	transcription start site region 96320	1738 bp downstream
Tssr96321	transcription start site region 96321	1691 bp downstream
Tssr96322	transcription start site region 96322	148 bp downstream
Tssr96323	transcription start site region 96323	355 bp upstream
Tssr96324	transcription start site region 96324	456 bp upstream
Tssr96325	transcription start site region 96325	616 bp upstream
Tssr96326	transcription start site region 96326	633 bp upstream
Tssr96327	transcription start site region 96327	649 bp upstream
Tssr96328	transcription start site region 96328	696 bp upstream