rs38666443 SNP Detail

Summary

• ID
  rs38666443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3489365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTATTGG GACACTGGTC
  CAGCAGAGCA TGTCACCTGG GGGACCAGCC AGCCCCTCCC CCTGGATTTG GAGCTGTCTG
  TTTTTGTAAC AGCTTCCTCA AAACCTGTCT ACCAGCCGCC AATGCCACAA GAACAAAGCG
  AGTTGTCTGG GGACTCTTTG TCCCCAGAAG GAATGACGAT AGGACTGTGA GACACTAGCC
  Y
  GATAAAATGT GTCTGCGCCT TAATGCCACT GCAAGGTGAC TGCAGGAAAA GCCCATTTGT
  CCCCAGAACT TCCTTCCCTA CCAGCAGTTC AGTCAGGCCC TGATGTGACT TTAGACCTTG
  GCCTGGTAGG CCAGGAGGAC CCAGGCTGGC AGAGGTGGCA TACAGCTGGT GTAGTATGGG
  CAGGGGTTTC TCAAAGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50589676	NES13657932	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38666443					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50589676	NES13657932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3489365 () rs orientation: forward

Symbol	Name	Function Class
Rr364729	regulatory region 364729	1036 bp proximal
Rr542415	regulatory region 542415	1177 bp distal
Rr542416	regulatory region 542416	1487 bp proximal
Tssr157389	transcription start site region 157389	1525 bp downstream
Tssr157390	transcription start site region 157390	1900 bp downstream
Tssr157391	transcription start site region 157391	1921 bp downstream