rs38668674 SNP Detail

Summary

• ID
  rs38668674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29230756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTCTGG TCCTCTTTCT
  CTATATCCTT TACCTGTTTA CTGTTTACGG TTCCAGCTAT TAAGATCATT TGGTTGTATG
  TGAGCTGGCT TGAGTGTGGG ACGTCTGCAG ACTGGATGTG CCCAGGACTT ATCCTGAGAG
  TACTGAGCGG TGCTACAGGC ATGAGCATTT ACCTGTACAG GAGAGCTGCA GTGTGTGGAG
  R
  CTAGATAAGC ACTTATGTTT ATTTTGGCTT TTGTGGAGTA TTGTGGAACT TGCTCTGTAG
  ACCAGGCTAG CCTCCAACTC AGAGATTTCC CCTGCCTCTG CCTTCCAAAT GCTGGGATTA
  AAACCACCAC CCACCGGGCT TCATTTGTTT CTTTTAGTGT CTTTTCCTTT GTAATTTGAA
  GGTGTCTTGA GTAAGGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50753217	NES13566151	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38668674					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50753217	NES13566151	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29230756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	901 bp distal
Gm41829	predicted gene, 41829	1031 bp upstream
Gm59364	predicted gene, 59364	1855 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	490 bp upstream
Tssr155780	transcription start site region 155780	1691 bp downstream
Tssr155781	transcription start site region 155781	1502 bp downstream
Tssr155782	transcription start site region 155782	1489 bp downstream
Tssr155783	transcription start site region 155783	1455 bp downstream
Tssr155784	transcription start site region 155784	1043 bp downstream
Tssr155785	transcription start site region 155785	914 bp downstream
Tssr155786	transcription start site region 155786	871 bp downstream
Tssr155787	transcription start site region 155787	766 bp downstream
Tssr158749	transcription start site region 158749	1251 bp upstream