rs38669160 SNP Detail

Summary

• ID
  rs38669160
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19584880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGAAGAG TATATAGGGT
  AGTCAAGTCC TCAGCAATCA GGGCTCAAGT ACCGACACAG GAGAAAGCAG ATTTAAAAAG
  CCCAATAAAA GATAAAGAAA TTTATACTTT AAGTTATAGT AGCTGGTTTA GTAACTTACC
  AGTGAGAGAA GGTACCCAAG CAATTAGAAA ACTAAGGTAA TTCTGCTTCA AATAGTAATA
  R
  TATAAAGACC ACCAAGGATA GAGCTAAAAG TCCACAGTTG AAAGGGTTTG CTCATGCAAT
  CAACAAATTT AGGATCAAAA TGCAAGTGTG CCGTAAAATA GGAGCTAAAT AGTATACTGG
  ATATTGTGAA TTTTCCAAAT AGACACAATA GTGATGCTAG AGATGCCCCA CATATCCCTA
  AATATGAATC TACCCAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50921115	NES13476781	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38669160					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50921115	NES13476781	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19584880 () rs orientation: forward

Symbol	Name	Function Class
Gm55451	predicted gene, 55451	737 bp upstream