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rs38675938 SNP Detail
Summary
  • ID
    rs38675938
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:118354988 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGCGAGGAG GGAATCATAT
    GATTCCAAAA TTATCATGAT CTAGCCAATA GGACGAAGTG CCCTGTGTGC CTTAAAAGAA
    ACAGATAGCA CCATGAGAGA AGATGTCCGA CTTAGAAAAT GGTCTGGCGC CTAGGCTGCC
    ACAAAGTTGA GGAGAGGACT AGTCTGATGA CATCATTGTT TCTCCCTACC AACTATGTGA
    S
    CAAATGCACA AAATAAACAA CCCCTGTTCA TATTTATGAA CGTCACATTT TAGAATATTA
    CTATATATTT TTAAAAAAAT AGGCATGGAC TGCCATGCAG AAAGAAAGCC TTGATCCTCT
    ACAGATACCC TTTCACTAAA GTAGTAGCTC TCAACATGTG CATGGAGACC CCTCTGGGAC
    TCTTTTGGGA GTGGAAAGAC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
AKR/J
CAST/EiJ
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
ss51603617 NES14666224 PERLEGEN MM_PANEL2 f SNP C G C G C G C
SNP Consensus Information
SNP Consensus Type
AKR/J
CAST/EiJ
FVB/NJ
MOLF/EiJ
NOD/ShiLtJ
PWD/PhJ
WSB/EiJ
rs38675938 SNP C G C G C G C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51603617 NES14666224 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:118354988 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13752 CpG island 13752 693 bp proximal
Dpyd dihydropyrimidine dehydrogenase 790 bp upstream
Rr583905 regulatory region 583905 324 bp proximal
Rr583906 regulatory region 583906 852 bp proximal
Tssr31414 transcription start site region 31414 806 bp upstream
Tssr31415 transcription start site region 31415 823 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory