rs38676104 SNP Detail

Summary

• ID
  rs38676104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126681485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCGGCAG TTGGCCTCTC
  CGTACCTCCT CCGGCTGATG TCTGCTGCAG ACTCCCCAGC CTGTTTTGAC CGGCTCTTAG
  AAAGAAAAGC AAAAAACTGT CGGTGGCCTG CATCAGGCAG GGAAACACCC CCACAAAACT
  GCAAGAGCAG AAATGGATAG ACTGTTAATA GCACGGACAT ATCCCAGGGT CTGTGCTTCT
  R
  CCTAATGGGA CTTCTTGTCT TCAGATTAGT CCACAATGGG GAAGTTGTTC ATCCTAAGAG
  AGATTCAAAT AAGAGAGTTC TTCTGTTTGA ACAGCAGGCA AGTAAATAGA ATGCAATCTG
  CAGCCTGCAC ACAGCTCCAG GCTGAGAGAG GCAGAGCTCA GGCACTGAGC AAGCCAGCTA
  CCAATTCCCT ACTTCTCGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50943617	NES14265095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38676104					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50943617	NES14265095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126681485 () rs orientation: forward

Symbol	Name	Function Class
Gm66841	predicted gene, 66841	303 bp upstream
Rr440688	regulatory region 440688	568 bp distal
Rr440689	regulatory region 440689	715 bp distal
Rr440690	regulatory region 440690	within coordinates