rs38676709 SNP Detail

Summary

• ID
  rs38676709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:59377864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATTTGG CATGAGAAAC
  CCATTGGCAC TTGCCACATC CTGTGGGTGA AGGGGGAGTG GTGGTGAGGT AGTGGGGTGA
  GGAGGTGGAG GGAATGGGGG GAGGGCGCTT CCCCCCTCCC TTTTTTGAGG AAGTTAGATC
  AGAGGAAGCT GTCTACAGTT AACCACCAGG GGGCAGCATG TAACCTATAC TCAGGCAAGG
  R
  TCTGGGATTT ACAGTCGGGC GACCCAGAGG TAGAGGTTTT TCAGGGTGGC AGCTGCTGAA
  TTATCAGTGC CAGGATGGAG AGTGCCTGTA TGCCCAACTG TAATGTCTTA ACTGAGACTG
  TGCAGGAGGT AGGCTGTCCC GTGGGATAAA CACGACTGTG TTAGTACTGT TAACCTCGGT
  GGCCTTGCCT CGTCTCTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50898699	NES13494812	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38676709					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50898699	NES13494812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59377864 () rs orientation: forward

Symbol	Name	Function Class
Gm33756	predicted gene, 33756	31 bp upstream
Rr370546	regulatory region 370546	within coordinates