rs38681122 SNP Detail

Summary

• ID
  rs38681122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44691456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTTGAA GTCCTGGAGC
  TATTCCTATA AAAAAATTTT CAAAATGTGT AAAAATTTCA CAAAATCATC ACACCCAGAT
  GATTTTACTA ATTTTTTGAT CACTTTACTT TTATAGGTAG GTGTGTATAC ATATCTCATA
  TACATACGTG TTTCTACACT CATAATTATA CTTAACCTTA TCTGGAACTA AATTAAAAAC
  Y
  TTATCTGCAT TCTCTGATTA CACTTAAATA ACCCTTATCA ATTTAAATTT GATTTATTCT
  CTGAGAAACT AAAACATATA ATAATAACTT ATTTGAGATG TACTTCACTT TAAACCAGAA
  ACCTCCAGTG GGAGGTTTTT TTTTTTTTTT TTTTTTTACA TAACTGAAGT ATGTATTCAT
  CTACTTGAAA TAAATAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50949658	NES13945451	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38681122					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50949658	NES13945451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44691456 () rs orientation: forward

Symbol	Name	Function Class
Gulp1	GULP, engulfment adaptor PTB domain containing 1	within coordinates
Tssr6574	transcription start site region 6574	156 bp upstream