rs38682048 SNP Detail

Summary

• ID
  rs38682048
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33697230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGACAAC AGCTTACATT
  AGCATGGTGA TATATTTTTA AATTGAGAAT TAACCTTTGT TGGCTAAAAT TGAAAATGAG
  AATTGAATGC ACTAGAGAAA ACTCTTGTTC TAACCTGAGC TTCATATTGA CTGCTCACAA
  AGCTGGAAAG ATGACCTTTC ATTGCTGTAG AGTCACAAGG CCATGCATAA TCAGCCACTC
  K
  CACAATAGTA GATTACAATT CCTATGTTCC CACCATGCTT TGGTTCTAAA AACTAATGTC
  AATTTTTAAG GATTTTTTCT GTGGTACATC ATCTAAAAGC ACAAGTCTGA AGCTATTTAT
  GGTTTAGTGG GTGAAGGGCT TTTGTCACAG AAGCATGAGG GCCTGAGTTC AAATCCACAG
  AACCCAGACA AAAGACAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51595707	NES14852335	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38682048					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51595707	NES14852335	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33697230 () rs orientation: forward

Symbol	Name	Function Class
Exoc4	exocyst complex component 4	within coordinates
Rr379165	regulatory region 379165	within coordinates