rs38686683 SNP Detail

Summary

• ID
  rs38686683
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60986824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGCTTA CGCACAGGCT
  TCAGGATGCT GTTGGTGACC TGGGCTCTCT TGGGTTTCTG CCTCTCAGTG CTCATCACAT
  GGCCGCAGTC TCATGGCCCT TGATGGCTGC TGACCTTCCA ACCATACTCC ACATACTCCA
  TACCTGGCAA TAGAATGAAG GAGGTCTCCT GGACAAATAA GCTCCGTTAA AGATATCCCA
  R
  GTGTCTTGCT GAGTGGCATC GACTGGCTTG CCACTGACTA TGCTTGGAGG AGGGTCTGGG
  AAATGCAGAT TTTTTAACTG AACAGATTTT TATCATCCCA TGGAAACTGA GTTCTTCTGA
  TGAAAGATTA GGGAAATGCA TTCATGGTCA GTAGCAAGAA GTCCTTGCTA GAGATAGGTC
  AGAAGAAGAG TTGTTCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52025177	NES15041795	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38686683					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52025177	NES15041795	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60986824 () rs orientation: forward

Symbol	Name	Function Class
Rr209952	regulatory region 209952	1986 bp distal
Rr209953	regulatory region 209953	1578 bp proximal